Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/ParE-DnaT |
| Location | 55242..55764 | Replicon | plasmid pMY732-2 |
| Accession | NZ_AP026909 | ||
| Organism | Escherichia coli strain MY732 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | U9YLU1 |
| Locus tag | MY015_RS25015 | Protein ID | WP_000638823.1 |
| Coordinates | 55242..55523 (-) | Length | 94 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | U9Y7J1 |
| Locus tag | MY015_RS25020 | Protein ID | WP_000121741.1 |
| Coordinates | 55513..55764 (-) | Length | 84 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY015_RS24980 (MY016_48200) | 51391..51711 | - | 321 | WP_000362080.1 | VirB3 family type IV secretion system protein | - |
| MY015_RS24985 (MY016_48210) | 51782..52072 | - | 291 | WP_000865479.1 | conjugal transfer protein | - |
| MY015_RS24990 (MY016_48220) | 52072..52656 | - | 585 | WP_001177113.1 | lytic transglycosylase domain-containing protein | - |
| MY015_RS24995 (MY016_48230) | 52677..53075 | - | 399 | WP_001153665.1 | hypothetical protein | - |
| MY015_RS25000 (MY016_48240) | 53194..53631 | - | 438 | WP_000539665.1 | type IV pilus biogenesis protein PilM | - |
| MY015_RS25005 (MY016_48250) | 53637..54872 | - | 1236 | WP_015059538.1 | TcpQ domain-containing protein | - |
| MY015_RS25010 (MY016_48260) | 54875..55174 | - | 300 | WP_000835764.1 | TrbM/KikA/MpfK family conjugal transfer protein | - |
| MY015_RS25015 (MY016_48270) | 55242..55523 | - | 282 | WP_000638823.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| MY015_RS25020 (MY016_48280) | 55513..55764 | - | 252 | WP_000121741.1 | hypothetical protein | Antitoxin |
| MY015_RS25025 | 55864..56499 | - | 636 | WP_015059536.1 | hypothetical protein | - |
| MY015_RS25030 (MY016_48290) | 56572..56859 | - | 288 | WP_001032611.1 | EexN family lipoprotein | - |
| MY015_RS25035 (MY016_48300) | 56872..57126 | - | 255 | WP_001043555.1 | EexN family lipoprotein | - |
| MY015_RS25040 (MY016_48310) | 57128..57769 | - | 642 | WP_001425343.1 | type IV secretion system protein | - |
| MY015_RS25045 (MY016_48320) | 57775..58770 | - | 996 | WP_001028543.1 | type IV secretion system protein | - |
| MY015_RS25050 (MY016_48330) | 58774..59031 | - | 258 | WP_000739144.1 | hypothetical protein | - |
| MY015_RS25055 (MY016_48340) | 59028..59330 | - | 303 | WP_001360345.1 | hypothetical protein | - |
| MY015_RS25060 | 59311..59568 | - | 258 | WP_001542015.1 | hypothetical protein | - |
| MY015_RS25065 (MY016_48350) | 59601..60047 | - | 447 | WP_001243165.1 | hypothetical protein | - |
| MY015_RS25070 (MY016_48360) | 60058..60228 | - | 171 | WP_000550720.1 | hypothetical protein | - |
| MY015_RS25075 (MY016_48370) | 60232..60675 | - | 444 | WP_000964330.1 | NfeD family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Mobilizable plasmid | mcr-1.1 | - | 1..61498 | 61498 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10945.79 Da Isoelectric Point: 10.4997
>T42835 WP_000638823.1 NZ_AP026909:c55523-55242 [Escherichia coli]
MIYELAFDHRALKEWQKLGHTVREQFKKKLSERLINPRVPAAKLHGHTDRYKIKLRASGYRLVYQVIDEKVVLLVISVGK
REGSDVYHMADTR
MIYELAFDHRALKEWQKLGHTVREQFKKKLSERLINPRVPAAKLHGHTDRYKIKLRASGYRLVYQVIDEKVVLLVISVGK
REGSDVYHMADTR
Download Length: 282 bp
>T42835 NZ_AP026909:c55523-55242 [Escherichia coli]
ATGATTTATGAACTGGCATTTGACCACAGAGCACTGAAGGAATGGCAAAAACTCGGTCACACTGTTCGTGAGCAATTCAA
AAAGAAACTGTCAGAACGCCTGATAAATCCACGCGTCCCCGCAGCCAAGCTACATGGTCATACTGACCGTTACAAAATTA
AGCTTCGCGCATCCGGTTACAGGCTCGTTTATCAGGTAATTGATGAGAAGGTCGTTTTGCTTGTGATTTCTGTGGGAAAA
AGAGAAGGCAGCGACGTCTATCACATGGCAGATACCCGCTGA
ATGATTTATGAACTGGCATTTGACCACAGAGCACTGAAGGAATGGCAAAAACTCGGTCACACTGTTCGTGAGCAATTCAA
AAAGAAACTGTCAGAACGCCTGATAAATCCACGCGTCCCCGCAGCCAAGCTACATGGTCATACTGACCGTTACAAAATTA
AGCTTCGCGCATCCGGTTACAGGCTCGTTTATCAGGTAATTGATGAGAAGGTCGTTTTGCTTGTGATTTCTGTGGGAAAA
AGAGAAGGCAGCGACGTCTATCACATGGCAGATACCCGCTGA
Antitoxin
Download Length: 84 a.a. Molecular weight: 9223.38 Da Isoelectric Point: 3.9823
>AT42835 WP_000121741.1 NZ_AP026909:c55764-55513 [Escherichia coli]
MSYQILTTTAASITDLKKNPMGTVAEGEGDAVAILNRNEPAFYCVPPELYAYYRELAEDAELNAIADERMKNPDIVRVNL
DDL
MSYQILTTTAASITDLKKNPMGTVAEGEGDAVAILNRNEPAFYCVPPELYAYYRELAEDAELNAIADERMKNPDIVRVNL
DDL
Download Length: 252 bp
>AT42835 NZ_AP026909:c55764-55513 [Escherichia coli]
ATGAGCTACCAAATTCTGACTACGACAGCAGCCAGTATTACTGACCTGAAAAAAAATCCTATGGGAACTGTAGCCGAAGG
AGAAGGGGATGCCGTCGCAATCCTGAACCGAAATGAACCAGCGTTCTACTGTGTCCCACCAGAACTTTATGCCTACTACC
GGGAACTCGCTGAAGACGCTGAACTCAACGCAATTGCTGATGAAAGAATGAAAAATCCAGACATTGTAAGGGTTAACCTG
GATGATTTATGA
ATGAGCTACCAAATTCTGACTACGACAGCAGCCAGTATTACTGACCTGAAAAAAAATCCTATGGGAACTGTAGCCGAAGG
AGAAGGGGATGCCGTCGCAATCCTGAACCGAAATGAACCAGCGTTCTACTGTGTCCCACCAGAACTTTATGCCTACTACC
GGGAACTCGCTGAAGACGCTGAACTCAACGCAATTGCTGATGAAAGAATGAAAAATCCAGACATTGTAAGGGTTAACCTG
GATGATTTATGA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|