Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 783636..784434 | Replicon | chromosome |
| Accession | NZ_AP026907 | ||
| Organism | Escherichia coli strain MY732 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | MY015_RS03825 | Protein ID | WP_072665353.1 |
| Coordinates | 783636..784010 (-) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | A0A3W5RLB4 |
| Locus tag | MY015_RS03830 | Protein ID | WP_041124172.1 |
| Coordinates | 784057..784434 (-) | Length | 126 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MY015_RS03790 (778785) | 778785..779348 | + | 564 | WP_001115140.1 | type II secretion system minor pseudopilin GspH | - |
| MY015_RS03795 (779345) | 779345..779716 | + | 372 | WP_000820125.1 | type II secretion system minor pseudopilin GspI | - |
| MY015_RS03800 (779713) | 779713..780312 | + | 600 | WP_001255040.1 | type II secretion system minor pseudopilin GspJ | - |
| MY015_RS03805 (780315) | 780315..781292 | + | 978 | WP_000633238.1 | type II secretion system minor pseudopilin GspK | - |
| MY015_RS03810 (781289) | 781289..782467 | + | 1179 | WP_000094971.1 | type II secretion system protein GspL | - |
| MY015_RS03815 (782469) | 782469..783005 | + | 537 | WP_000942795.1 | GspM family type II secretion system protein YghD | - |
| MY015_RS03820 (783286) | 783286..783624 | - | 339 | WP_227456471.1 | DUF5983 family protein | - |
| MY015_RS03825 (783636) | 783636..784010 | - | 375 | WP_072665353.1 | TA system toxin CbtA family protein | Toxin |
| MY015_RS03830 (784057) | 784057..784434 | - | 378 | WP_041124172.1 | type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA | Antitoxin |
| MY015_RS03835 (784510) | 784510..784731 | - | 222 | WP_000692307.1 | DUF987 domain-containing protein | - |
| MY015_RS03840 (784800) | 784800..785276 | - | 477 | WP_021559500.1 | RadC family protein | - |
| MY015_RS03845 (785292) | 785292..785777 | - | 486 | WP_041124170.1 | antirestriction protein | - |
| MY015_RS03850 (785869) | 785869..786687 | - | 819 | WP_001234621.1 | DUF932 domain-containing protein | - |
| MY015_RS03855 (786786) | 786786..787019 | - | 234 | WP_001278287.1 | DUF905 family protein | - |
| MY015_RS03860 (787025) | 787025..787702 | - | 678 | WP_021559490.1 | hypothetical protein | - |
| MY015_RS03865 (787853) | 787853..788533 | - | 681 | WP_001282912.1 | WYL domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | papC / papD | 783636..832518 | 48882 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14063.00 Da Isoelectric Point: 7.2920
>T42810 WP_072665353.1 NZ_AP026907:c784010-783636 [Escherichia coli]
MNTLPDTHVRETSGCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
MNTLPDTHVRETSGCPSPVTIWQTLLTRLLDQHYGLTLNDTPFADERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
STCPRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKHPEKR
Download Length: 375 bp
>T42810 NZ_AP026907:c784010-783636 [Escherichia coli]
ATGAATACATTACCCGACACTCACGTACGGGAGACATCGGGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACTTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCCGGAGAAACGATGA
ATGAATACATTACCCGACACTCACGTACGGGAGACATCGGGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGACTGCTGGACCAGCACTATGGCCTCACGCTGAATGACACACCGTTCGCTGATGAACGTGTGATTGAGCAGCATATTG
AGGCAGGGATTTCACTGTGTGATGCGGTGAATTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCACTTGTCCCCGCTCTCAGTTAATAAACAGTATTGATATCCTCCGGGCTCGCCGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGCATCCGGAGAAACGATGA
Antitoxin
Download Length: 126 a.a. Molecular weight: 13752.57 Da Isoelectric Point: 6.2021
>AT42810 WP_041124172.1 NZ_AP026907:c784434-784057 [Escherichia coli]
VSDTLPGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRASIRGRFSDADAYHLDQAFPLLMKQLELMLTGG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAAPAITV
VSDTLPGTTHPDDNHDRPWWGLPCTVTPCFGARLVQEGNRLHYLADRASIRGRFSDADAYHLDQAFPLLMKQLELMLTGG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPAAPAITV
Download Length: 378 bp
>AT42810 NZ_AP026907:c784434-784057 [Escherichia coli]
GTGTCAGACACACTCCCCGGGACAACGCATCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCCCGACTGGTACAGGAGGGTAACCGCCTGCATTACCTTGCAGACCGCGCCAGTATCAGAGGCAGGT
TCAGCGACGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCGGCGGT
GAACTGAATCCCCGTCATCAGCATACCGTCACACTGTATGCGAAAGGGCTGACCTGCGAAGCCGATACCCTTGGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCGGCAGCGCCCGCAATCACCGTATAA
GTGTCAGACACACTCCCCGGGACAACGCATCCCGACGACAATCACGACCGCCCCTGGTGGGGGCTGCCCTGCACCGTGAC
GCCCTGTTTCGGGGCCCGACTGGTACAGGAGGGTAACCGCCTGCATTACCTTGCAGACCGCGCCAGTATCAGAGGCAGGT
TCAGCGACGCAGATGCGTACCACCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGGAACTCATGCTCACCGGCGGT
GAACTGAATCCCCGTCATCAGCATACCGTCACACTGTATGCGAAAGGGCTGACCTGCGAAGCCGATACCCTTGGCAGTTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCGGCAGCGCCCGCAATCACCGTATAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|