Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3007343..3007487 | Replicon | chromosome |
| Accession | NZ_AP026886 | ||
| Organism | Enterobacter asburiae strain KAM576 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3007349..3007452 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3007343..3007487 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO861_RS14775 (KAM576c_29030) | 3002500..3003948 | + | 1449 | WP_213787121.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OO861_RS14780 (KAM576c_29040) | 3004055..3004294 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OO861_RS14785 (KAM576c_29050) | 3004329..3004973 | - | 645 | WP_182383727.1 | protein-serine/threonine phosphatase | - |
| OO861_RS14790 (KAM576c_29060) | 3005140..3006081 | + | 942 | WP_182383728.1 | VirK/YbjX family protein | - |
| OO861_RS14795 (KAM576c_29070) | 3006255..3007151 | + | 897 | WP_182383729.1 | benzoate transporter | - |
| - | 3007343..3007487 | + | 145 | - | - | Antitoxin |
| - | 3007349..3007452 | - | 104 | - | - | Toxin |
| OO861_RS14800 (KAM576c_29080) | 3007591..3007929 | - | 339 | WP_033145840.1 | YebY family protein | - |
| OO861_RS14805 (KAM576c_29090) | 3007946..3008815 | - | 870 | WP_193139471.1 | copper homeostasis membrane protein CopD | - |
| OO861_RS14810 (KAM576c_29100) | 3008817..3009188 | - | 372 | WP_193139473.1 | CopC domain-containing protein YobA | - |
| OO861_RS14815 (KAM576c_29110) | 3009325..3009555 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OO861_RS14820 (KAM576c_29120) | 3009666..3010316 | + | 651 | WP_264884694.1 | carbon-nitrogen hydrolase family protein | - |
| OO861_RS14825 (KAM576c_29130) | 3010341..3011003 | + | 663 | WP_193139478.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42792 NZ_AP026886:c3007452-3007349 [Enterobacter asburiae]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 145 bp
>AT42792 NZ_AP026886:3007343-3007487 [Enterobacter asburiae]
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGT
TGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
