Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2682880..2683031 | Replicon | chromosome |
| Accession | NZ_AP026873 | ||
| Organism | Enterobacter roggenkampii strain KAM546 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2682893..2682996 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2682880..2683031 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO938_RS13470 (KAM546c_26700) | 2679155..2680597 | + | 1443 | WP_177317637.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OO938_RS13475 (KAM546c_26710) | 2680704..2680943 | + | 240 | WP_008500472.1 | YebV family protein | - |
| OO938_RS13480 (KAM546c_26720) | 2680978..2681622 | - | 645 | WP_264880500.1 | protein-serine/threonine phosphatase | - |
| OO938_RS13485 (KAM546c_26730) | 2681788..2682729 | + | 942 | WP_264880502.1 | VirK/YbjX family protein | - |
| - | 2682880..2683031 | + | 152 | - | - | Antitoxin |
| - | 2682893..2682996 | - | 104 | - | - | Toxin |
| OO938_RS13490 (KAM546c_26740) | 2683135..2683473 | - | 339 | WP_248209857.1 | YebY family protein | - |
| OO938_RS13495 (KAM546c_26750) | 2683490..2684359 | - | 870 | WP_264880505.1 | copper homeostasis membrane protein CopD | - |
| OO938_RS13500 (KAM546c_26760) | 2684361..2684732 | - | 372 | WP_008500466.1 | CopC domain-containing protein YobA | - |
| OO938_RS13505 (KAM546c_26770) | 2684870..2685100 | + | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| OO938_RS13510 | 2685211..2685861 | + | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| OO938_RS13515 (KAM546c_26800) | 2685886..2686548 | + | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42774 NZ_AP026873:c2682996-2682893 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 152 bp
>AT42774 NZ_AP026873:2682880-2683031 [Enterobacter roggenkampii]
CTTTTATGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTTATGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
