Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type IV Classification (family/domain) cptAB/Cpta(toxin)
Location 1005284..1005938 Replicon chromosome
Accession NZ_AP026794
Organism Escherichia coli strain IPCEC48

Toxin (Protein)


Gene name cptA Uniprot ID F4T2L4
Locus tag OPA53_RS05015 Protein ID WP_000244765.1
Coordinates 1005531..1005938 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name cptB Uniprot ID F4T2L5
Locus tag OPA53_RS05010 Protein ID WP_000354050.1
Coordinates 1005284..1005550 (+) Length 89 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OPA53_RS04990 (1001372) 1001372..1002805 - 1434 WP_001296350.1 6-phospho-beta-glucosidase BglA -
OPA53_RS04995 (1002850) 1002850..1003161 + 312 WP_001182956.1 N(4)-acetylcytidine aminohydrolase -
OPA53_RS05000 (1003325) 1003325..1003984 + 660 WP_000250275.1 hemolysin III family protein -
OPA53_RS05005 (1004061) 1004061..1005041 - 981 WP_000886084.1 tRNA-modifying protein YgfZ -
OPA53_RS05010 (1005284) 1005284..1005550 + 267 WP_000354050.1 FAD assembly factor SdhE Antitoxin
OPA53_RS05015 (1005531) 1005531..1005938 + 408 WP_000244765.1 protein YgfX Toxin
OPA53_RS05020 (1005978) 1005978..1006499 - 522 WP_001055874.1 flavodoxin FldB -
OPA53_RS05025 (1006611) 1006611..1007507 + 897 WP_000806638.1 site-specific tyrosine recombinase XerD -
OPA53_RS05030 (1007532) 1007532..1008242 + 711 WP_000715230.1 bifunctional protein-disulfide isomerase/oxidoreductase DsbC -
OPA53_RS05035 (1008248) 1008248..1009981 + 1734 WP_000813195.1 single-stranded-DNA-specific exonuclease RecJ -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Inner membrane protein YgfX

(3-131)

Antitoxin

Flavinator of succinate dehydrogenase

(7-79)


Sequences

Toxin        


Download         Length: 136 a.a.        Molecular weight: 16043.95 Da        Isoelectric Point: 11.5202

>T42728 WP_000244765.1 NZ_AP026794:1005531-1005938 [Escherichia coli]
VVLWQSDLRVSWRAQWLSLLIHGLVAAVILLIPWPLSYTPLWMVLLSLVVFDCVRSQRRINARQGEIRLLMDGRLRWQGQ
EWSIVKAPWMIKSGMMLRLRSDSGKRQHLWLAADSMDEAEWRDLRRILLQQETQR

Download         Length: 408 bp

>T42728 NZ_AP026794:1005531-1005938 [Escherichia coli]
GTGGTCCTGTGGCAATCTGATTTGCGCGTCTCCTGGCGCGCACAGTGGCTTTCCTTGCTGATTCATGGGCTGGTTGCCGC
TGTTATTTTACTCATTCCCTGGCCGCTCAGTTACACCCCGTTATGGATGGTGTTACTTTCGCTGGTGGTGTTTGATTGCG
TTCGCAGCCAGCGGCGCATTAATGCTCGCCAGGGGGAAATTCGCTTGTTGATGGACGGGCGTTTGCGTTGGCAAGGGCAG
GAGTGGAGCATCGTCAAAGCGCCGTGGATGATTAAGAGCGGCATGATGCTGCGTTTACGTTCTGACAGCGGAAAACGGCA
ACATTTATGGCTGGCAGCTGACAGCATGGACGAAGCCGAATGGCGGGATTTACGGCGGATATTGTTGCAACAAGAGACGC
AAAGATAA

Antitoxin


Download         Length: 89 a.a.        Molecular weight: 10535.07 Da        Isoelectric Point: 5.1599

>AT42728 WP_000354050.1 NZ_AP026794:1005284-1005550 [Escherichia coli]
MDINNKARIHWACRRGMRELDISIMPFFEHEYDSLSDDEKRTFIRLLECDDPDLFNWLMNHGKPADAELEMMVRLIQTRN
RERGPVAI

Download         Length: 267 bp

>AT42728 NZ_AP026794:1005284-1005550 [Escherichia coli]
ATGGACATTAACAACAAAGCCCGCATTCATTGGGCATGCCGCCGTGGTATGCGCGAACTCGATATTTCAATCATGCCGTT
TTTCGAACATGAGTACGACAGCTTAAGCGATGACGAAAAACGCACCTTTATTCGTCTGCTGGAATGTGACGATCCGGACC
TGTTTAACTGGCTGATGAATCACGGTAAACCAGCCGATGCAGAACTGGAAATGATGGTCCGACTCATCCAGACACGGAAC
CGGGAACGTGGTCCTGTGGCAATCTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A454A7D7

Antitoxin

Source ID Structure
AlphaFold DB A0A061L3F4

References