Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2080938..2081209 | Replicon | chromosome |
| Accession | NZ_AP026783 | ||
| Organism | Escherichia coli strain IPCEC31 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2081068..2081171 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2080938..2081209 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO978_RS10030 | 2077493..2078155 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| OO978_RS10035 | 2078179..2078835 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO978_RS10040 | 2078937..2079167 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO978_RS10045 | 2079306..2079680 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| OO978_RS10050 | 2079684..2080556 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| OO978_RS10055 | 2080569..2080910 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2080938..2081209 | - | 272 | - | - | Antitoxin |
| - | 2081068..2081171 | + | 104 | - | - | Toxin |
| OO978_RS10060 | 2081306..2081962 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| OO978_RS10065 | 2081963..2082154 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OO978_RS10070 | 2082259..2082495 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OO978_RS10075 | 2082613..2084052 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42667 NZ_AP026783:2081068-2081171 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42667 NZ_AP026783:c2081209-2080938 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
