Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2030091..2030234 | Replicon | chromosome |
| Accession | NZ_AP026680 | ||
| Organism | Salmonella enterica subsp. enterica serovar Oranienburg strain 11548 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2030129..2030232 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2030091..2030234 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QMM99_RS09915 | 2026561..2027214 | - | 654 | WP_023214468.1 | exodeoxyribonuclease X | - |
| QMM99_RS09920 | 2027238..2027894 | - | 657 | WP_000100257.1 | carbon-nitrogen hydrolase family protein | - |
| QMM99_RS09925 | 2028001..2028231 | - | 231 | WP_000856225.1 | DNA polymerase III subunit theta | - |
| QMM99_RS09930 | 2028369..2028743 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| QMM99_RS09935 | 2028744..2029619 | + | 876 | WP_023214467.1 | copper homeostasis membrane protein CopD | - |
| QMM99_RS09940 | 2029636..2029989 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2030091..2030234 | - | 144 | - | - | Antitoxin |
| - | 2030129..2030232 | + | 104 | - | - | Toxin |
| QMM99_RS09945 | 2030363..2031204 | - | 842 | Protein_1944 | tyrosine-type recombinase/integrase | - |
| QMM99_RS09950 | 2031310..2031666 | + | 357 | WP_024147047.1 | hypothetical protein | - |
| QMM99_RS09955 | 2031590..2032249 | + | 660 | WP_223152472.1 | DUF4376 domain-containing protein | - |
| QMM99_RS09960 | 2032260..2032637 | + | 378 | WP_001277619.1 | DUF1353 domain-containing protein | - |
| QMM99_RS09965 | 2032641..2032751 | + | 111 | Protein_1948 | tail fiber assembly protein | - |
| QMM99_RS09970 | 2032842..2033027 | - | 186 | WP_071585801.1 | PagK family vesicle-borne virulence factor | - |
| QMM99_RS09975 | 2033273..2033446 | - | 174 | Protein_1950 | tail fiber assembly protein | - |
| QMM99_RS09980 | 2033466..2034236 | - | 771 | WP_023214465.1 | transporter substrate-binding domain-containing protein | - |
| QMM99_RS09985 | 2034727..2034855 | + | 129 | Protein_1952 | helix-turn-helix domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | sopE2 | 2022751..2065714 | 42963 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42583 NZ_AP026680:2030129-2030232 [Salmonella enterica subsp. enterica serovar Oranienburg]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT42583 NZ_AP026680:c2030234-2030091 [Salmonella enterica subsp. enterica serovar Oranienburg]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTG
