42572

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relE-yefM/Txe-RelB
Location 2625691..2626220 Replicon chromosome
Accession NZ_AP026660
Organism Enterococcus faecium strain GK941

Toxin (Protein)


Gene name relE Uniprot ID Q3XX67
Locus tag OQH75_RS13270 Protein ID WP_002296560.1
Coordinates 2625691..2625957 (-) Length 89 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID A0A829F3T0
Locus tag OQH75_RS13275 Protein ID WP_002296559.1
Coordinates 2625957..2626220 (-) Length 88 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OQH75_RS13245 (EfmGK941_26180) 2621059..2622234 + 1176 WP_002294192.1 betaine/proline/choline family ABC transporter ATP-binding protein -
OQH75_RS13250 (EfmGK941_26190) 2622238..2622879 + 642 WP_002293405.1 ABC transporter permease -
OQH75_RS13255 (EfmGK941_26200) 2622876..2623793 + 918 WP_002302664.1 osmoprotectant ABC transporter substrate-binding protein -
OQH75_RS13260 (EfmGK941_26210) 2623808..2624461 + 654 WP_002323018.1 ABC transporter permease -
OQH75_RS13265 (EfmGK941_26220) 2625002..2625490 - 489 WP_002296561.1 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase -
OQH75_RS13270 (EfmGK941_26230) 2625691..2625957 - 267 WP_002296560.1 Txe/YoeB family addiction module toxin Toxin
OQH75_RS13275 (EfmGK941_26240) 2625957..2626220 - 264 WP_002296559.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
OQH75_RS13280 (EfmGK941_26250) 2626697..2626882 + 186 WP_002296558.1 transcriptional regulator -
OQH75_RS13285 (EfmGK941_26260) 2627024..2628847 - 1824 WP_002294202.1 APC family permease -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(9-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(5-69)


Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10660.13 Da        Isoelectric Point: 9.9931

>T42572 WP_002296560.1 NZ_AP026660:c2625957-2625691 [Enterococcus faecium]
MSNYTVAIKNSAKVDLRKIKQTNLKKQFEEVIQTLKEDPYMPTQSFEKLRPTHEGRYSRRLNRQHRVVYKVDEENKVVEI
YSAWTHYE

Download         Length: 267 bp

>T42572 NZ_AP026660:c2625957-2625691 [Enterococcus faecium]
ATGAGTAACTATACAGTCGCAATCAAAAACTCTGCGAAAGTGGATTTAAGAAAAATCAAGCAAACGAATTTAAAGAAACA
ATTTGAAGAAGTGATTCAGACATTGAAGGAAGATCCATATATGCCCACGCAGTCTTTTGAAAAGCTGAGACCTACACATG
AAGGCAGATACTCACGCAGGCTGAATAGACAGCATCGAGTGGTTTACAAAGTTGATGAGGAAAATAAAGTTGTAGAAATT
TATTCTGCCTGGACACATTATGAGTGA

Antitoxin


Download         Length: 88 a.a.        Molecular weight: 10046.05 Da        Isoelectric Point: 4.1207

>AT42572 WP_002296559.1 NZ_AP026660:c2626220-2625957 [Enterococcus faecium]
MANTTMNPSTARKNFYQLLKEVNENHTEIEIISDRSGNNAVLIGLEDWRAIQETLFLEQTGTLDKVRDREKDDSSFTNID
DIDWEAL

Download         Length: 264 bp

>AT42572 NZ_AP026660:c2626220-2625957 [Enterococcus faecium]
ATGGCTAATACAACGATGAATCCTAGCACTGCTCGTAAAAATTTTTATCAGTTATTGAAAGAGGTAAATGAAAATCATAC
TGAAATCGAGATTATTAGTGATCGTAGTGGAAACAATGCTGTATTGATTGGGCTGGAAGACTGGAGAGCGATTCAAGAAA
CCCTTTTTCTTGAGCAAACAGGTACTTTAGATAAAGTACGAGACCGCGAAAAAGACGACAGTAGCTTTACGAATATCGAT
GATATTGATTGGGAAGCTCTTTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829FCW8

Antitoxin

Source ID Structure
AlphaFold DB A0A829F3T0

References