Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1962140..1962287 Replicon chromosome
Accession NZ_AP026407
Organism Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM644

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1962181..1962283 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1962140..1962287 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P4I75_RS09665 1957275..1959335 + 2061 WP_186976664.1 oligopeptidase B -
P4I75_RS09670 1959339..1959998 - 660 WP_023290237.1 exodeoxyribonuclease X -
P4I75_RS09675 1960077..1960307 - 231 WP_002911406.1 DNA polymerase III subunit theta -
P4I75_RS09680 1960420..1960794 + 375 WP_032453372.1 CopC domain-containing protein YobA -
P4I75_RS09685 1960798..1961667 + 870 WP_101976597.1 copper homeostasis membrane protein CopD -
P4I75_RS09690 1961684..1962022 + 339 WP_002911404.1 YebY family protein -
- 1962140..1962287 - 148 - - Antitoxin
- 1962181..1962283 + 103 - - Toxin
P4I75_RS09695 1962662..1962805 - 144 WP_032425946.1 Ecr family regulatory small membrane protein -
P4I75_RS09700 1962909..1963877 - 969 WP_072413392.1 VirK/YbjX family protein -
P4I75_RS09705 1964034..1964687 + 654 WP_261902277.1 protein-serine/threonine phosphatase -
P4I75_RS09710 1964684..1964875 - 192 WP_002911395.1 YebW family protein -
P4I75_RS09715 1964973..1965212 - 240 WP_002911393.1 YebV family protein -
P4I75_RS09720 1965328..1966758 - 1431 WP_261902278.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 103 bp

>T42483 NZ_AP026407:1962181-1962283 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 148 bp

>AT42483 NZ_AP026407:c1962287-1962140 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References