Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1962862..1963009 | Replicon | chromosome |
| Accession | NZ_AP026392 | ||
| Organism | Klebsiella quasipneumoniae subsp. quasipneumoniae strain KAM622 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1962903..1963005 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1962862..1963009 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P4I30_RS09840 | 1957997..1960057 | + | 2061 | WP_186976664.1 | oligopeptidase B | - |
| P4I30_RS09845 | 1960061..1960720 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| P4I30_RS09850 | 1960799..1961029 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P4I30_RS09855 | 1961142..1961516 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| P4I30_RS09860 | 1961520..1962389 | + | 870 | WP_101976597.1 | copper homeostasis membrane protein CopD | - |
| P4I30_RS09865 | 1962406..1962744 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1962862..1963009 | - | 148 | - | - | Antitoxin |
| - | 1962903..1963005 | + | 103 | - | - | Toxin |
| P4I30_RS09870 | 1963384..1963527 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| P4I30_RS09875 | 1963631..1964599 | - | 969 | WP_072413392.1 | VirK/YbjX family protein | - |
| P4I30_RS09880 | 1964756..1965409 | + | 654 | WP_261902277.1 | protein-serine/threonine phosphatase | - |
| P4I30_RS09885 | 1965406..1965597 | - | 192 | WP_002911395.1 | YebW family protein | - |
| P4I30_RS09890 | 1965695..1965934 | - | 240 | WP_002911393.1 | YebV family protein | - |
| P4I30_RS09895 | 1966050..1967480 | - | 1431 | WP_261902278.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T42463 NZ_AP026392:1962903-1963005 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT42463 NZ_AP026392:c1963009-1962862 [Klebsiella quasipneumoniae subsp. quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
