Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1701247..1701518 Replicon chromosome
Accession NZ_AP026114
Organism Escherichia coli strain CEC01302

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1701377..1701480 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1701247..1701518 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OO829_RS08350 1697802..1698464 - 663 WP_000944244.1 exodeoxyribonuclease X -
OO829_RS08355 1698488..1699144 - 657 WP_000011656.1 carbon-nitrogen hydrolase family protein YobB -
OO829_RS08360 1699246..1699476 - 231 WP_000916763.1 DNA polymerase III subunit theta -
OO829_RS08365 1699615..1699989 + 375 WP_000168751.1 CopC domain-containing protein YobA -
OO829_RS08370 1699993..1700865 + 873 WP_000879314.1 copper homeostasis membrane protein CopD -
OO829_RS08375 1700878..1701219 + 342 WP_000976483.1 YebY family protein -
- 1701247..1701518 - 272 - - Antitoxin
- 1701377..1701480 + 104 - - Toxin
OO829_RS08380 1701615..1702271 + 657 WP_000812736.1 protein-serine/threonine phosphatase -
OO829_RS08385 1702272..1702463 - 192 WP_001296140.1 YebW family protein -
OO829_RS08390 1702568..1702804 - 237 WP_001295499.1 YebV family protein -
OO829_RS08395 1702922..1704361 - 1440 WP_001302304.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T42356 NZ_AP026114:1701377-1701480 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT42356 NZ_AP026114:c1701518-1701247 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References