Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1358031..1358302 | Replicon | chromosome |
| Accession | NZ_AP026110 | ||
| Organism | Escherichia coli strain CEC08123 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1358161..1358264 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1358031..1358302 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO855_RS06495 | 1354586..1355248 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| OO855_RS06500 | 1355272..1355928 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO855_RS06505 | 1356030..1356260 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO855_RS06510 | 1356399..1356773 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO855_RS06515 | 1356777..1357649 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO855_RS06520 | 1357662..1358003 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 1358031..1358302 | - | 272 | - | - | Antitoxin |
| - | 1358161..1358264 | + | 104 | - | - | Toxin |
| OO855_RS06525 | 1358399..1359055 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| OO855_RS06530 | 1359056..1359247 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OO855_RS06535 | 1359352..1359588 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OO855_RS06540 | 1359706..1361145 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42281 NZ_AP026110:1358161-1358264 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42281 NZ_AP026110:c1358302-1358031 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
