Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2490305..2490576 | Replicon | chromosome |
| Accession | NZ_AP026108 | ||
| Organism | Escherichia coli strain CEC13091 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2490343..2490446 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2490305..2490576 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO842_RS12460 | 2487462..2488901 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OO842_RS12465 | 2489019..2489255 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OO842_RS12470 | 2489360..2489551 | + | 192 | WP_001296140.1 | YebW family protein | - |
| OO842_RS12475 | 2489552..2490208 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2490305..2490576 | + | 272 | - | - | Antitoxin |
| - | 2490343..2490446 | - | 104 | - | - | Toxin |
| OO842_RS12480 | 2490604..2490945 | - | 342 | WP_000976483.1 | YebY family protein | - |
| OO842_RS12485 | 2490958..2491830 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO842_RS12490 | 2491834..2492208 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO842_RS12495 | 2492347..2492577 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO842_RS12500 | 2492679..2493335 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO842_RS12505 | 2493359..2494021 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42249 NZ_AP026108:c2490446-2490343 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42249 NZ_AP026108:2490305-2490576 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
