Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2332309..2332580 | Replicon | chromosome |
| Accession | NZ_AP026106 | ||
| Organism | Escherichia coli strain CEC01311 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2332347..2332450 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2332309..2332580 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO831_RS11475 | 2329466..2330905 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OO831_RS11480 | 2331023..2331259 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OO831_RS11485 | 2331364..2331555 | + | 192 | WP_001296140.1 | YebW family protein | - |
| OO831_RS11490 | 2331556..2332212 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2332309..2332580 | + | 272 | - | - | Antitoxin |
| - | 2332347..2332450 | - | 104 | - | - | Toxin |
| OO831_RS11495 | 2332608..2332949 | - | 342 | WP_000976483.1 | YebY family protein | - |
| OO831_RS11500 | 2332962..2333834 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO831_RS11505 | 2333838..2334212 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO831_RS11510 | 2334351..2334581 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO831_RS11515 | 2334683..2335339 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO831_RS11520 | 2335363..2336025 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42209 NZ_AP026106:c2332450-2332347 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42209 NZ_AP026106:2332309-2332580 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
