Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1373842..1374113 | Replicon | chromosome |
| Accession | NZ_AP026101 | ||
| Organism | Escherichia coli strain 93_161312 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1373972..1374075 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1373842..1374113 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO868_RS06570 | 1370397..1371059 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| OO868_RS06575 | 1371083..1371739 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO868_RS06580 | 1371841..1372071 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO868_RS06585 | 1372210..1372584 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO868_RS06590 | 1372588..1373460 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO868_RS06595 | 1373473..1373814 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 1373842..1374113 | - | 272 | - | - | Antitoxin |
| - | 1373972..1374075 | + | 104 | - | - | Toxin |
| OO868_RS06600 | 1374210..1374866 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| OO868_RS06605 | 1374867..1375058 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OO868_RS06610 | 1375163..1375399 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OO868_RS06615 | 1375517..1376956 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42132 NZ_AP026101:1373972-1374075 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42132 NZ_AP026101:c1374113-1373842 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
