Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2357984..2358255 | Replicon | chromosome |
| Accession | NZ_AP026097 | ||
| Organism | Escherichia coli strain 57_142493 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2358022..2358125 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2357984..2358255 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO832_RS11680 | 2355141..2356580 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OO832_RS11685 | 2356698..2356934 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OO832_RS11690 | 2357039..2357230 | + | 192 | WP_001296140.1 | YebW family protein | - |
| OO832_RS11695 | 2357231..2357887 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2357984..2358255 | + | 272 | - | - | Antitoxin |
| - | 2358022..2358125 | - | 104 | - | - | Toxin |
| OO832_RS11700 | 2358283..2358624 | - | 342 | WP_000976483.1 | YebY family protein | - |
| OO832_RS11705 | 2358637..2359509 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO832_RS11710 | 2359513..2359887 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO832_RS11715 | 2360026..2360256 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO832_RS11720 | 2360358..2361014 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO832_RS11725 | 2361038..2361700 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42071 NZ_AP026097:c2358125-2358022 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42071 NZ_AP026097:2357984-2358255 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
