Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2294318..2294589 | Replicon | chromosome |
| Accession | NZ_AP026095 | ||
| Organism | Escherichia coli strain 53_142304 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2294448..2294551 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2294318..2294589 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO816_RS11565 | 2290873..2291535 | - | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
| OO816_RS11570 | 2291559..2292215 | - | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO816_RS11575 | 2292317..2292547 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO816_RS11580 | 2292686..2293060 | + | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO816_RS11585 | 2293064..2293936 | + | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO816_RS11590 | 2293949..2294290 | + | 342 | WP_000976483.1 | YebY family protein | - |
| - | 2294318..2294589 | - | 272 | - | - | Antitoxin |
| - | 2294448..2294551 | + | 104 | - | - | Toxin |
| OO816_RS11595 | 2294686..2295342 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| OO816_RS11600 | 2295343..2295534 | - | 192 | WP_001296140.1 | YebW family protein | - |
| OO816_RS11605 | 2295639..2295875 | - | 237 | WP_001295499.1 | YebV family protein | - |
| OO816_RS11610 | 2295993..2297432 | - | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T42035 NZ_AP026095:2294448-2294551 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT42035 NZ_AP026095:c2294589-2294318 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
