Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2384755..2385026 | Replicon | chromosome |
| Accession | NZ_AP026090 | ||
| Organism | Escherichia coli strain 26_141088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2384793..2384896 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2384755..2385026 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO788_RS11930 | 2381912..2383351 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OO788_RS11935 | 2383469..2383705 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OO788_RS11940 | 2383810..2384001 | + | 192 | WP_001296140.1 | YebW family protein | - |
| OO788_RS11945 | 2384002..2384658 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2384755..2385026 | + | 272 | - | - | Antitoxin |
| - | 2384793..2384896 | - | 104 | - | - | Toxin |
| OO788_RS11950 | 2385054..2385395 | - | 342 | WP_000976483.1 | YebY family protein | - |
| OO788_RS11955 | 2385408..2386280 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO788_RS11960 | 2386284..2386658 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO788_RS11965 | 2386797..2387027 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO788_RS11970 | 2387129..2387785 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO788_RS11975 | 2387809..2388471 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41963 NZ_AP026090:c2384896-2384793 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT41963 NZ_AP026090:2384755-2385026 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
