Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | paaR-paaA-parE/- |
| Location | 2107459..2107930 | Replicon | chromosome |
| Accession | NZ_AP026090 | ||
| Organism | Escherichia coli strain 26_141088 | ||
Toxin (Protein)
| Gene name | parE_1 | Uniprot ID | A0A0D7C2L1 |
| Locus tag | OO788_RS10555 | Protein ID | WP_001303511.1 |
| Coordinates | 2107652..2107930 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | paaA | Uniprot ID | Q8XAD5 |
| Locus tag | OO788_RS10550 | Protein ID | WP_001302048.1 |
| Coordinates | 2107459..2107650 (+) | Length | 64 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO788_RS10510 (2102666) | 2102666..2103250 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| OO788_RS10515 (2103307) | 2103307..2103702 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| OO788_RS10520 (2103718) | 2103718..2104487 | - | 770 | Protein_2064 | DUF1627 domain-containing protein | - |
| OO788_RS10525 (2104513) | 2104513..2105253 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| OO788_RS10530 (2105260) | 2105260..2106222 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| OO788_RS10535 (2106245) | 2106245..2106670 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| OO788_RS10540 (2106667) | 2106667..2106969 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| OO788_RS10545 (2107067) | 2107067..2107438 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| OO788_RS10550 (2107459) | 2107459..2107650 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin |
| OO788_RS10555 (2107652) | 2107652..2107930 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| OO788_RS10560 (2108283) | 2108283..2108582 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| OO788_RS10565 (2108654) | 2108654..2108872 | + | 219 | WP_001171930.1 | protein YdfC | - |
| OO788_RS10570 (2109441) | 2109441..2109629 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| OO788_RS10575 (2109626) | 2109626..2109817 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| OO788_RS10580 (2109910) | 2109910..2110995 | + | 1086 | Protein_2076 | exonuclease | - |
| OO788_RS10585 (2111046) | 2111046..2112259 | + | 1214 | WP_162829202.1 | IS3-like element IS1203 family transposase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleG7' | 2022429..2124123 | 101694 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10661.25 Da Isoelectric Point: 5.5647
>T41962 WP_001303511.1 NZ_AP026090:2107652-2107930 [Escherichia coli]
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
Download Length: 279 bp
>T41962 NZ_AP026090:2107652-2107930 [Escherichia coli]
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
Antitoxin
Download Length: 64 a.a. Molecular weight: 7463.47 Da Isoelectric Point: 8.6828
>AT41962 WP_001302048.1 NZ_AP026090:2107459-2107650 [Escherichia coli]
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
Download Length: 192 bp
>AT41962 NZ_AP026090:2107459-2107650 [Escherichia coli]
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|