Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2390810..2391081 Replicon chromosome
Accession NZ_AP026087
Organism Escherichia coli strain 8_140198

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2390848..2390951 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2390810..2391081 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
OO841_RS12030 2387967..2389406 + 1440 WP_001302304.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
OO841_RS12035 2389524..2389760 + 237 WP_001295499.1 YebV family protein -
OO841_RS12040 2389865..2390056 + 192 WP_001296140.1 YebW family protein -
OO841_RS12045 2390057..2390713 - 657 WP_000812736.1 protein-serine/threonine phosphatase -
- 2390810..2391081 + 272 - - Antitoxin
- 2390848..2390951 - 104 - - Toxin
OO841_RS12050 2391109..2391450 - 342 WP_264831377.1 YebY family protein -
OO841_RS12055 2391463..2392335 - 873 WP_000879314.1 copper homeostasis membrane protein CopD -
OO841_RS12060 2392339..2392713 - 375 WP_000168751.1 CopC domain-containing protein YobA -
OO841_RS12065 2392852..2393082 + 231 WP_000916763.1 DNA polymerase III subunit theta -
OO841_RS12070 2393184..2393840 + 657 WP_000011656.1 carbon-nitrogen hydrolase family protein YobB -
OO841_RS12075 2393864..2394526 + 663 WP_000944244.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T41924 NZ_AP026087:c2390951-2390848 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT41924 NZ_AP026087:2390810-2391081 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References