Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2362628..2362899 | Replicon | chromosome |
| Accession | NZ_AP026085 | ||
| Organism | Escherichia coli strain H52_982342 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2362666..2362769 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2362628..2362899 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO840_RS11705 | 2359785..2361224 | + | 1440 | WP_001302304.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| OO840_RS11710 | 2361342..2361578 | + | 237 | WP_001295499.1 | YebV family protein | - |
| OO840_RS11715 | 2361683..2361874 | + | 192 | WP_001296140.1 | YebW family protein | - |
| OO840_RS11720 | 2361875..2362531 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2362628..2362899 | + | 272 | - | - | Antitoxin |
| - | 2362666..2362769 | - | 104 | - | - | Toxin |
| OO840_RS11725 | 2362927..2363268 | - | 342 | WP_000976483.1 | YebY family protein | - |
| OO840_RS11730 | 2363281..2364153 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| OO840_RS11735 | 2364157..2364531 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| OO840_RS11740 | 2364670..2364900 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| OO840_RS11745 | 2365002..2365658 | + | 657 | WP_000011656.1 | carbon-nitrogen hydrolase family protein YobB | - |
| OO840_RS11750 | 2365682..2366344 | + | 663 | WP_000944244.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41883 NZ_AP026085:c2362769-2362666 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT41883 NZ_AP026085:2362628-2362899 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
