Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | paaR-paaA-parE/- |
| Location | 2134980..2135451 | Replicon | chromosome |
| Accession | NZ_AP026082 | ||
| Organism | Escherichia coli strain F765 | ||
Toxin (Protein)
| Gene name | parE_1 | Uniprot ID | A0A0D7C2L1 |
| Locus tag | OO934_RS10670 | Protein ID | WP_001303511.1 |
| Coordinates | 2135173..2135451 (+) | Length | 93 a.a. |
Antitoxin (Protein)
| Gene name | paaA | Uniprot ID | Q8XAD5 |
| Locus tag | OO934_RS10665 | Protein ID | WP_001302048.1 |
| Coordinates | 2134980..2135171 (+) | Length | 64 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OO934_RS10625 (2130187) | 2130187..2130771 | - | 585 | WP_000206793.1 | DUF551 domain-containing protein | - |
| OO934_RS10630 (2130828) | 2130828..2131223 | - | 396 | WP_001118159.1 | DUF977 family protein | - |
| OO934_RS10635 (2131239) | 2131239..2132008 | - | 770 | Protein_2087 | DUF1627 domain-containing protein | - |
| OO934_RS10640 (2132034) | 2132034..2132774 | - | 741 | WP_000788938.1 | ATP-binding protein | - |
| OO934_RS10645 (2132781) | 2132781..2133743 | - | 963 | WP_000095669.1 | helix-turn-helix domain-containing protein | - |
| OO934_RS10650 (2133766) | 2133766..2134191 | - | 426 | WP_000693943.1 | toxin YdaT family protein | - |
| OO934_RS10655 (2134188) | 2134188..2134490 | - | 303 | WP_000172738.1 | transcriptional regulator | - |
| OO934_RS10660 (2134588) | 2134588..2134959 | + | 372 | WP_001169686.1 | hypothetical protein | - |
| OO934_RS10665 (2134980) | 2134980..2135171 | + | 192 | WP_001302048.1 | hypothetical protein | Antitoxin |
| OO934_RS10670 (2135173) | 2135173..2135451 | + | 279 | WP_001303511.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| OO934_RS10675 (2135803) | 2135803..2136102 | + | 300 | WP_001240334.1 | hypothetical protein | - |
| OO934_RS10680 (2136174) | 2136174..2136392 | + | 219 | WP_001171930.1 | protein YdfC | - |
| OO934_RS10685 (2136961) | 2136961..2137149 | + | 189 | WP_000449192.1 | cell division inhibition protein DicB | - |
| OO934_RS10690 (2137146) | 2137146..2137337 | + | 192 | WP_001090200.1 | DUF1482 family protein | - |
| OO934_RS10695 (2137430) | 2137430..2139901 | + | 2472 | WP_000048458.1 | exonuclease | - |
| OO934_RS10700 (2139974) | 2139974..2140225 | + | 252 | WP_000005552.1 | excisionase family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | nleG7' | 2045575..2150330 | 104755 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 93 a.a. Molecular weight: 10661.25 Da Isoelectric Point: 5.5647
>T41847 WP_001303511.1 NZ_AP026082:2135173-2135451 [Escherichia coli]
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
MLPVLWLESADTDLDDITSYIARFDIDAAERLWQRLRGCVLPLSEHPYLYPPSDRVPGLREIVAHPNYIILYRVTTSSVE
VVNVIHARRQFP
Download Length: 279 bp
>T41847 NZ_AP026082:2135173-2135451 [Escherichia coli]
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
ATGTTACCCGTGTTATGGCTTGAAAGCGCAGATACCGACCTAGATGATATAACTAGTTATATTGCTCGTTTCGACATAGA
TGCGGCTGAACGCTTATGGCAGCGATTAAGGGGTTGTGTGCTGCCGTTATCCGAACATCCGTATTTATACCCACCAAGCG
ACAGAGTACCTGGCTTGCGTGAGATTGTAGCCCACCCTAACTATATAATTCTATACCGCGTAACAACATCAAGCGTTGAA
GTAGTAAACGTGATCCACGCAAGACGCCAGTTTCCCTAA
Antitoxin
Download Length: 64 a.a. Molecular weight: 7463.47 Da Isoelectric Point: 8.6828
>AT41847 WP_001302048.1 NZ_AP026082:2134980-2135171 [Escherichia coli]
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
MNRALSPMVSEFETIEQENSYNEWLRAKVATSLADPRPAIPHDEVERRMAERFAKMRKERSKQ
Download Length: 192 bp
>AT41847 NZ_AP026082:2134980-2135171 [Escherichia coli]
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
ATGAATAGAGCCCTTTCACCAATGGTTTCTGAATTTGAAACCATTGAACAAGAAAACAGTTACAACGAATGGCTGCGTGC
GAAAGTAGCAACGAGCCTTGCAGATCCGCGCCCAGCAATTCCCCATGACGAAGTTGAGCGCAGAATGGCAGAACGCTTTG
CTAAGATGCGCAAGGAACGGAGCAAGCAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|