Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070525..2070728 | Replicon | chromosome |
| Accession | NZ_AP025927 | ||
| Organism | Enterobacter hormaechei strain FUJ80381 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070618..2070721 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070525..2070728 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK75_RS09985 (FJMB80381_19550) | 2067062..2067724 | - | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
| NGK75_RS09990 (FJMB80381_19560) | 2067749..2068399 | - | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK75_RS09995 (FJMB80381_19570) | 2068511..2068741 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK75_RS10000 (FJMB80381_19580) | 2068879..2069250 | + | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK75_RS10005 (FJMB80381_19590) | 2069252..2070121 | + | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK75_RS10010 (FJMB80381_19600) | 2070138..2070476 | + | 339 | WP_003859787.1 | YebY family protein | - |
| - | 2070525..2070728 | - | 204 | - | - | Antitoxin |
| - | 2070618..2070721 | + | 104 | - | - | Toxin |
| NGK75_RS10015 (FJMB80381_19610) | 2070799..2071884 | - | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| NGK75_RS10020 (FJMB80381_19620) | 2071853..2072125 | - | 273 | WP_023300430.1 | excisionase | - |
| NGK75_RS10025 (FJMB80381_19630) | 2072285..2073037 | - | 753 | WP_032648687.1 | methyltransferase | - |
| NGK75_RS10030 | 2073087..2073299 | - | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK75_RS10035 (FJMB80381_19640) | 2073326..2073541 | - | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK75_RS10040 (FJMB80381_19650) | 2073633..2073833 | - | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK75_RS10045 (FJMB80381_19660) | 2073830..2074102 | - | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK75_RS10050 (FJMB80381_19670) | 2074099..2074317 | - | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK75_RS10055 (FJMB80381_19680) | 2074314..2074865 | - | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK75_RS10060 (FJMB80381_19690) | 2074862..2075029 | - | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK75_RS10065 | 2075081..2075185 | - | 105 | Protein_1961 | regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrB / gtrA | 2003183..2122781 | 119598 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41733 NZ_AP025927:2070618-2070721 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41733 NZ_AP025927:c2070728-2070525 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
