Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2890449..2890652 | Replicon | chromosome |
| Accession | NZ_AP025923 | ||
| Organism | Enterobacter hormaechei strain FUJ80380 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2890456..2890559 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2890449..2890652 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK76_RS13785 | 2885992..2886096 | + | 105 | Protein_2700 | regulator | - |
| NGK76_RS13790 (FJMB80380_27110) | 2886148..2886315 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK76_RS13795 (FJMB80380_27120) | 2886312..2886863 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK76_RS13800 (FJMB80380_27130) | 2886860..2887078 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK76_RS13805 (FJMB80380_27140) | 2887075..2887347 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK76_RS13810 (FJMB80380_27150) | 2887344..2887544 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK76_RS13815 (FJMB80380_27160) | 2887636..2887851 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK76_RS13820 | 2887878..2888090 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK76_RS13825 (FJMB80380_27170) | 2888140..2888892 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGK76_RS13830 (FJMB80380_27180) | 2889052..2889324 | + | 273 | WP_023300430.1 | excisionase | - |
| NGK76_RS13835 (FJMB80380_27190) | 2889293..2890378 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2890449..2890652 | + | 204 | - | - | Antitoxin |
| - | 2890456..2890559 | - | 104 | - | - | Toxin |
| NGK76_RS13840 (FJMB80380_27200) | 2890701..2891039 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGK76_RS13845 (FJMB80380_27210) | 2891056..2891925 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK76_RS13850 (FJMB80380_27220) | 2891927..2892298 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK76_RS13855 (FJMB80380_27230) | 2892436..2892666 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK76_RS13860 (FJMB80380_27240) | 2892778..2893428 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK76_RS13865 (FJMB80380_27250) | 2893453..2894115 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2835731..2896172 | 60441 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41715 NZ_AP025923:c2890559-2890456 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41715 NZ_AP025923:2890449-2890652 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
