Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2891675..2891878 | Replicon | chromosome |
| Accession | NZ_AP025919 | ||
| Organism | Enterobacter hormaechei strain FUJ80378 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2891682..2891785 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2891675..2891878 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK71_RS13790 | 2887218..2887322 | + | 105 | Protein_2701 | regulator | - |
| NGK71_RS13795 (FJMB80378_27100) | 2887374..2887541 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK71_RS13800 (FJMB80378_27110) | 2887538..2888089 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK71_RS13805 (FJMB80378_27120) | 2888086..2888304 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK71_RS13810 (FJMB80378_27130) | 2888301..2888573 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK71_RS13815 (FJMB80378_27140) | 2888570..2888770 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK71_RS13820 (FJMB80378_27150) | 2888862..2889077 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK71_RS13825 | 2889104..2889316 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK71_RS13830 (FJMB80378_27160) | 2889366..2890118 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGK71_RS13835 (FJMB80378_27170) | 2890278..2890550 | + | 273 | WP_023300430.1 | excisionase | - |
| NGK71_RS13840 (FJMB80378_27180) | 2890519..2891604 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2891675..2891878 | + | 204 | - | - | Antitoxin |
| - | 2891682..2891785 | - | 104 | - | - | Toxin |
| NGK71_RS13845 (FJMB80378_27190) | 2891927..2892265 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGK71_RS13850 (FJMB80378_27200) | 2892282..2893151 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK71_RS13855 (FJMB80378_27210) | 2893153..2893524 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK71_RS13860 (FJMB80378_27220) | 2893662..2893892 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK71_RS13865 (FJMB80378_27230) | 2894004..2894654 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK71_RS13870 (FJMB80378_27240) | 2894679..2895341 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2829414..2957935 | 128521 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41695 NZ_AP025919:c2891785-2891682 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41695 NZ_AP025919:2891675-2891878 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
