Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2934540..2934743 | Replicon | chromosome |
| Accession | NZ_AP025903 | ||
| Organism | Enterobacter hormaechei strain FUJ80374 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2934547..2934650 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2934540..2934743 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK42_RS14090 | 2930083..2930187 | + | 105 | Protein_2761 | regulator | - |
| NGK42_RS14095 (FJMB80374_27710) | 2930239..2930406 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK42_RS14100 (FJMB80374_27720) | 2930403..2930954 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK42_RS14105 (FJMB80374_27730) | 2930951..2931169 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK42_RS14110 (FJMB80374_27740) | 2931166..2931438 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK42_RS14115 (FJMB80374_27750) | 2931435..2931635 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK42_RS14120 (FJMB80374_27760) | 2931727..2931942 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK42_RS14125 | 2931969..2932181 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK42_RS14130 (FJMB80374_27770) | 2932231..2932983 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGK42_RS14135 (FJMB80374_27780) | 2933143..2933415 | + | 273 | WP_023300430.1 | excisionase | - |
| NGK42_RS14140 (FJMB80374_27790) | 2933384..2934469 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2934540..2934743 | + | 204 | - | - | Antitoxin |
| - | 2934547..2934650 | - | 104 | - | - | Toxin |
| NGK42_RS14145 (FJMB80374_27800) | 2934792..2935130 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGK42_RS14150 (FJMB80374_27810) | 2935147..2936016 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK42_RS14155 (FJMB80374_27820) | 2936018..2936389 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK42_RS14160 (FJMB80374_27830) | 2936527..2936757 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK42_RS14165 (FJMB80374_27840) | 2936869..2937519 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK42_RS14170 (FJMB80374_27850) | 2937544..2938206 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2879822..3000800 | 120978 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41619 NZ_AP025903:c2934650-2934547 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41619 NZ_AP025903:2934540-2934743 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
