Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2933981..2934184 | Replicon | chromosome |
| Accession | NZ_AP025899 | ||
| Organism | Enterobacter hormaechei strain FUJ80334 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2933988..2934091 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2933981..2934184 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ98_RS14090 | 2929524..2929628 | + | 105 | Protein_2761 | regulator | - |
| NGJ98_RS14095 (FJMB80334_27680) | 2929680..2929847 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGJ98_RS14100 (FJMB80334_27690) | 2929844..2930395 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGJ98_RS14105 (FJMB80334_27700) | 2930392..2930610 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGJ98_RS14110 (FJMB80334_27710) | 2930607..2930879 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGJ98_RS14115 (FJMB80334_27720) | 2930876..2931076 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGJ98_RS14120 (FJMB80334_27730) | 2931168..2931383 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGJ98_RS14125 | 2931410..2931622 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGJ98_RS14130 (FJMB80334_27740) | 2931672..2932424 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGJ98_RS14135 (FJMB80334_27750) | 2932584..2932856 | + | 273 | WP_023300430.1 | excisionase | - |
| NGJ98_RS14140 (FJMB80334_27760) | 2932825..2933910 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2933981..2934184 | + | 204 | - | - | Antitoxin |
| - | 2933988..2934091 | - | 104 | - | - | Toxin |
| NGJ98_RS14145 (FJMB80334_27770) | 2934233..2934571 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGJ98_RS14150 (FJMB80334_27780) | 2934588..2935457 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGJ98_RS14155 (FJMB80334_27790) | 2935459..2935830 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGJ98_RS14160 (FJMB80334_27800) | 2935968..2936198 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ98_RS14165 (FJMB80334_27810) | 2936310..2936960 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGJ98_RS14170 (FJMB80334_27820) | 2936985..2937647 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2877195..3000241 | 123046 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41600 NZ_AP025899:c2934091-2933988 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41600 NZ_AP025899:2933981-2934184 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
