Detailed information of TA system TA041594

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): shpAB/BrnT-BrnA
• Location: 727208..727784
• Replicon: chromosome
• Accession: NZ_AP025899
• Organism: Enterobacter hormaechei strain FUJ80334

Toxin (Protein)

• Gene name: shpA
• Uniprot ID: A0A800YKM1
• Locus tag: NGJ98_RS03460
• Protein ID: WP_015572580.1
• Coordinates: 727208..727495 (+)
• Length: 96 a.a.

Antitoxin (Protein)

• Gene name: shpB
• Uniprot ID: A0A801DSF4
• Locus tag: NGJ98_RS03465
• Protein ID: WP_017694570.1
• Coordinates: 727482..727784 (+)
• Length: 101 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
NGJ98_RS03435 (FJMB80334_06720)	722326..723021	+	696	WP_032647138.1	winged helix-turn-helix domain-containing protein	-
NGJ98_RS03440 (FJMB80334_06730)	723171..723641	+	471	WP_032647140.1	MarR family transcriptional regulator	-
NGJ98_RS03445 (FJMB80334_06740)	723638..724705	+	1068	WP_026094404.1	HlyD family secretion protein	-
NGJ98_RS03450 (FJMB80334_06750)	724695..725771	+	1077	WP_015572578.1	DUF2955 domain-containing protein	-
NGJ98_RS03455 (FJMB80334_06760)	725768..727039	-	1272	WP_032647142.1	DUF445 domain-containing protein	-
NGJ98_RS03460 (FJMB80334_06770)	727208..727495	+	288	WP_015572580.1	BrnT family toxin	Toxin
NGJ98_RS03465 (FJMB80334_06780)	727482..727784	+	303	WP_017694570.1	BrnA antitoxin family protein	Antitoxin
NGJ98_RS03470 (FJMB80334_06790)	727813..728451	-	639	WP_032647144.1	LysE family translocator	-
NGJ98_RS03475 (FJMB80334_06800)	728490..729242	-	753	WP_015572582.1	AraC family transcriptional regulator	-
NGJ98_RS03480 (FJMB80334_06810)	729396..730766	+	1371	WP_032647147.1	NAD-dependent succinate-semialdehyde dehydrogenase	-
NGJ98_RS03485 (FJMB80334_06820)	730944..731489	-	546	WP_006810254.1	YfaZ family outer membrane protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Ribonuclease toxin, BrnT, of type II toxin-antitoxin system (7-88)

Antitoxin

• BrnA antitoxin of type II toxin-antitoxin system (32-93)

Sequences

Toxin

Protein

• Length: 96 a.a.
• Molecular weight: 11296.81 Da
• Isoelectric Point: 7.3587

>T41594 WP_015572580.1 NZ_AP025899:727208-727495 [Enterobacter hormaechei]
MPIEYEWDSNKAKSNLQKHAIRFEDAVLVFDDPCHLSVQDRYENGEFRWQTIGLVQGVIVILVAHTVRFESGDEIIRIIS
ARKADRKERRRYEHR

Nucleotide

• Length: 288 bp

>T41594 NZ_AP025899:727208-727495 [Enterobacter hormaechei]
ATGCCTATAGAGTATGAATGGGATAGCAATAAGGCGAAAAGCAATCTGCAAAAACACGCCATTCGTTTTGAAGATGCAGT
TCTGGTTTTTGACGATCCCTGCCATTTGTCTGTTCAGGATCGTTATGAAAACGGGGAGTTTCGCTGGCAAACCATTGGTC
TTGTACAGGGTGTTATTGTCATTCTGGTCGCGCACACGGTACGTTTTGAAAGCGGGGATGAAATCATACGTATCATCAGT
GCGCGTAAAGCGGATCGTAAAGAGAGGAGGCGTTATGAGCATCGTTAA

Antitoxin

Protein

• Length: 101 a.a.
• Molecular weight: 11482.13 Da
• Isoelectric Point: 10.4094

>AT41594 WP_017694570.1 NZ_AP025899:727482-727784 [Enterobacter hormaechei]
MSIVKHKRGSAPEVSARREAELKALADKPDREIDYSDIPATEDDRWAGAVRGKFYRPLKTQASVRIDADVMEWLKRPGKG
YQTRLNAILREAMLRDQNKK

Nucleotide

• Length: 303 bp

>AT41594 NZ_AP025899:727482-727784 [Enterobacter hormaechei]
ATGAGCATCGTTAAACATAAACGCGGTAGTGCACCGGAAGTGAGTGCCCGCCGGGAGGCTGAACTCAAAGCGCTGGCGGA
TAAACCCGACAGGGAAATTGATTACAGCGATATACCGGCCACGGAGGATGATCGCTGGGCCGGTGCCGTGCGGGGAAAAT
TCTATCGACCGCTCAAAACTCAGGCATCAGTACGCATTGACGCCGACGTGATGGAGTGGCTTAAACGGCCAGGGAAAGGT
TACCAGACGCGGCTTAATGCCATTTTGCGCGAGGCGATGCTGCGCGATCAGAACAAAAAATAA