Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2939371..2939574 | Replicon | chromosome |
| Accession | NZ_AP025891 | ||
| Organism | Enterobacter hormaechei strain FUJ80182 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2939378..2939481 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2939371..2939574 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ49_RS14125 | 2934914..2935018 | + | 105 | Protein_2768 | regulator | - |
| NGJ49_RS14130 (FJMB80182_27840) | 2935070..2935237 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGJ49_RS14135 (FJMB80182_27850) | 2935234..2935785 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGJ49_RS14140 (FJMB80182_27860) | 2935782..2936000 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGJ49_RS14145 (FJMB80182_27870) | 2935997..2936269 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGJ49_RS14150 (FJMB80182_27880) | 2936266..2936466 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGJ49_RS14155 (FJMB80182_27890) | 2936558..2936773 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGJ49_RS14160 | 2936800..2937012 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGJ49_RS14165 (FJMB80182_27900) | 2937062..2937814 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGJ49_RS14170 (FJMB80182_27910) | 2937974..2938246 | + | 273 | WP_023300430.1 | excisionase | - |
| NGJ49_RS14175 (FJMB80182_27920) | 2938215..2939300 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2939371..2939574 | + | 204 | - | - | Antitoxin |
| - | 2939378..2939481 | - | 104 | - | - | Toxin |
| NGJ49_RS14180 (FJMB80182_27930) | 2939623..2939961 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGJ49_RS14185 (FJMB80182_27940) | 2939978..2940847 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGJ49_RS14190 (FJMB80182_27950) | 2940849..2941220 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGJ49_RS14195 (FJMB80182_27960) | 2941358..2941588 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ49_RS14200 (FJMB80182_27970) | 2941700..2942350 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGJ49_RS14205 (FJMB80182_27980) | 2942375..2943037 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2884653..2945094 | 60441 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41562 NZ_AP025891:c2939481-2939378 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41562 NZ_AP025891:2939371-2939574 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
