Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2933765..2933968 | Replicon | chromosome |
| Accession | NZ_AP025867 | ||
| Organism | Enterobacter hormaechei strain FUJ80151 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2933772..2933875 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2933765..2933968 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK26_RS14080 | 2929308..2929412 | + | 105 | Protein_2759 | regulator | - |
| NGK26_RS14085 (FJMB80151_27610) | 2929464..2929631 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK26_RS14090 (FJMB80151_27620) | 2929628..2930179 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK26_RS14095 (FJMB80151_27630) | 2930176..2930394 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK26_RS14100 (FJMB80151_27640) | 2930391..2930663 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK26_RS14105 (FJMB80151_27650) | 2930660..2930860 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK26_RS14110 (FJMB80151_27660) | 2930952..2931167 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK26_RS14115 | 2931194..2931406 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK26_RS14120 (FJMB80151_27670) | 2931456..2932208 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGK26_RS14125 (FJMB80151_27680) | 2932368..2932640 | + | 273 | WP_023300430.1 | excisionase | - |
| NGK26_RS14130 (FJMB80151_27690) | 2932609..2933694 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2933765..2933968 | + | 204 | - | - | Antitoxin |
| - | 2933772..2933875 | - | 104 | - | - | Toxin |
| NGK26_RS14135 (FJMB80151_27700) | 2934017..2934355 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGK26_RS14140 (FJMB80151_27710) | 2934372..2935241 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK26_RS14145 (FJMB80151_27720) | 2935243..2935614 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK26_RS14150 (FJMB80151_27730) | 2935752..2935982 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK26_RS14155 (FJMB80151_27740) | 2936094..2936744 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK26_RS14160 (FJMB80151_27750) | 2936769..2937431 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | gtrA / gtrB | 2890103..2934355 | 44252 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41449 NZ_AP025867:c2933875-2933772 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41449 NZ_AP025867:2933765-2933968 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
