Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2905317..2905520 | Replicon | chromosome |
| Accession | NZ_AP025851 | ||
| Organism | Enterobacter hormaechei strain FUJ80068 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2905324..2905427 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2905317..2905520 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ26_RS13885 | 2900860..2900964 | + | 105 | Protein_2721 | regulator | - |
| NGJ26_RS13890 (FJMB80068_27320) | 2901016..2901183 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGJ26_RS13895 (FJMB80068_27330) | 2901180..2901731 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGJ26_RS13900 (FJMB80068_27340) | 2901728..2901946 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGJ26_RS13905 (FJMB80068_27350) | 2901943..2902215 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGJ26_RS13910 (FJMB80068_27360) | 2902212..2902412 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGJ26_RS13915 (FJMB80068_27370) | 2902504..2902719 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGJ26_RS13920 | 2902746..2902958 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGJ26_RS13925 (FJMB80068_27380) | 2903008..2903760 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGJ26_RS13930 (FJMB80068_27390) | 2903920..2904192 | + | 273 | WP_023300430.1 | excisionase | - |
| NGJ26_RS13935 (FJMB80068_27400) | 2904161..2905246 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2905317..2905520 | + | 204 | - | - | Antitoxin |
| - | 2905324..2905427 | - | 104 | - | - | Toxin |
| NGJ26_RS13940 (FJMB80068_27410) | 2905569..2905907 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGJ26_RS13945 (FJMB80068_27420) | 2905924..2906793 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGJ26_RS13950 (FJMB80068_27430) | 2906795..2907166 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGJ26_RS13955 (FJMB80068_27440) | 2907304..2907534 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ26_RS13960 (FJMB80068_27450) | 2907646..2908296 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGJ26_RS13965 (FJMB80068_27460) | 2908321..2908983 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2841824..2970882 | 129058 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41373 NZ_AP025851:c2905427-2905324 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41373 NZ_AP025851:2905317-2905520 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
