Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2948360..2948563 | Replicon | chromosome |
| Accession | NZ_AP025847 | ||
| Organism | Enterobacter hormaechei strain FUJ80063 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2948367..2948470 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2948360..2948563 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK57_RS14185 | 2943903..2944007 | + | 105 | Protein_2781 | regulator | - |
| NGK57_RS14190 (FJMB80063_27960) | 2944059..2944226 | + | 168 | WP_162875207.1 | hypothetical protein | - |
| NGK57_RS14195 (FJMB80063_27970) | 2944223..2944774 | + | 552 | WP_032647502.1 | phage N-6-adenine-methyltransferase | - |
| NGK57_RS14200 (FJMB80063_27980) | 2944771..2944989 | + | 219 | WP_006176198.1 | hypothetical protein | - |
| NGK57_RS14205 (FJMB80063_27990) | 2944986..2945258 | + | 273 | WP_080337312.1 | DUF5405 family protein | - |
| NGK57_RS14210 (FJMB80063_28000) | 2945255..2945455 | + | 201 | WP_032647498.1 | hypothetical protein | - |
| NGK57_RS14215 (FJMB80063_28010) | 2945547..2945762 | + | 216 | WP_032648685.1 | TraR/DksA family transcriptional regulator | - |
| NGK57_RS14220 | 2945789..2946001 | + | 213 | WP_223259311.1 | DUF4222 domain-containing protein | - |
| NGK57_RS14225 (FJMB80063_28020) | 2946051..2946803 | + | 753 | WP_032648687.1 | methyltransferase | - |
| NGK57_RS14230 (FJMB80063_28030) | 2946963..2947235 | + | 273 | WP_023300430.1 | excisionase | - |
| NGK57_RS14235 (FJMB80063_28040) | 2947204..2948289 | + | 1086 | WP_023300431.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2948360..2948563 | + | 204 | - | - | Antitoxin |
| - | 2948367..2948470 | - | 104 | - | - | Toxin |
| NGK57_RS14240 (FJMB80063_28050) | 2948612..2948950 | - | 339 | WP_003859787.1 | YebY family protein | - |
| NGK57_RS14245 (FJMB80063_28060) | 2948967..2949836 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| NGK57_RS14250 (FJMB80063_28070) | 2949838..2950209 | - | 372 | WP_032648690.1 | CopC domain-containing protein YobA | - |
| NGK57_RS14255 (FJMB80063_28080) | 2950347..2950577 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK57_RS14260 (FJMB80063_28090) | 2950689..2951339 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| NGK57_RS14265 (FJMB80063_28100) | 2951364..2952026 | + | 663 | WP_015570288.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | gtrA / gtrB | 2884867..3013925 | 129058 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41354 NZ_AP025847:c2948470-2948367 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 204 bp
>AT41354 NZ_AP025847:2948360-2948563 [Enterobacter hormaechei]
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
AATAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTG
GTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
