Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1965560..1965761 | Replicon | chromosome |
| Accession | NZ_AP025842 | ||
| Organism | Enterobacter hormaechei strain FUJ80379 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1965653..1965756 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1965560..1965761 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NMC33_RS09525 (FJMB80379_18530) | 1962109..1962771 | - | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
| NMC33_RS09530 (FJMB80379_18540) | 1962796..1963434 | - | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NMC33_RS09535 (FJMB80379_18550) | 1963546..1963776 | - | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NMC33_RS09540 (FJMB80379_18560) | 1963914..1964285 | + | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NMC33_RS09545 (FJMB80379_18570) | 1964287..1965156 | + | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| NMC33_RS09550 (FJMB80379_18580) | 1965173..1965511 | + | 339 | WP_022648464.1 | YebY family protein | - |
| - | 1965560..1965761 | - | 202 | - | - | Antitoxin |
| NMC33_RS09555 (FJMB80379_18590) | 1965637..1965834 | - | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 1965653..1965756 | + | 104 | - | - | Toxin |
| NMC33_RS09560 (FJMB80379_18600) | 1965880..1966860 | - | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NMC33_RS09565 (FJMB80379_18610) | 1967028..1967672 | + | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NMC33_RS09570 (FJMB80379_18620) | 1967707..1967946 | - | 240 | WP_006811010.1 | YebV family protein | - |
| NMC33_RS09575 (FJMB80379_18630) | 1968051..1969493 | - | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41337 NZ_AP025842:1965653-1965756 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41337 NZ_AP025842:c1965761-1965560 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
