Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2705707..2705908 | Replicon | chromosome |
| Accession | NZ_AP025839 | ||
| Organism | Enterobacter hormaechei strain FUJ80299 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2705712..2705815 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2705707..2705908 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK29_RS13005 (FJMB80299_25600) | 2701975..2703417 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK29_RS13010 (FJMB80299_25610) | 2703522..2703761 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK29_RS13015 (FJMB80299_25620) | 2703796..2704440 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK29_RS13020 (FJMB80299_25630) | 2704608..2705588 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK29_RS13025 (FJMB80299_25640) | 2705634..2705831 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2705707..2705908 | + | 202 | - | - | Antitoxin |
| - | 2705712..2705815 | - | 104 | - | - | Toxin |
| NGK29_RS13030 (FJMB80299_25650) | 2705957..2706295 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK29_RS13035 (FJMB80299_25660) | 2706312..2707181 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK29_RS13040 (FJMB80299_25670) | 2707183..2707554 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK29_RS13045 (FJMB80299_25680) | 2707692..2707922 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK29_RS13050 (FJMB80299_25690) | 2708034..2708672 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK29_RS13055 (FJMB80299_25700) | 2708697..2709359 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41321 NZ_AP025839:c2705815-2705712 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41321 NZ_AP025839:2705707-2705908 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
