Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2656483..2656684 | Replicon | chromosome |
| Accession | NZ_AP025833 | ||
| Organism | Enterobacter hormaechei strain FUJ80181 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2656488..2656591 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2656483..2656684 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK54_RS12580 (FJMB80181_24520) | 2652751..2654193 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK54_RS12585 (FJMB80181_24530) | 2654298..2654537 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK54_RS12590 (FJMB80181_24540) | 2654572..2655216 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK54_RS12595 (FJMB80181_24550) | 2655384..2656364 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK54_RS12600 (FJMB80181_24560) | 2656410..2656607 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2656483..2656684 | + | 202 | - | - | Antitoxin |
| - | 2656488..2656591 | - | 104 | - | - | Toxin |
| NGK54_RS12605 (FJMB80181_24570) | 2656733..2657071 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK54_RS12610 (FJMB80181_24580) | 2657088..2657957 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK54_RS12615 (FJMB80181_24590) | 2657959..2658330 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK54_RS12620 (FJMB80181_24600) | 2658468..2658698 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK54_RS12625 (FJMB80181_24610) | 2658810..2659448 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK54_RS12630 (FJMB80181_24620) | 2659473..2660135 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41289 NZ_AP025833:c2656591-2656488 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41289 NZ_AP025833:2656483-2656684 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
