Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2630058..2630259 | Replicon | chromosome |
| Accession | NZ_AP025827 | ||
| Organism | Enterobacter hormaechei strain FUJ80149 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2630063..2630166 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2630058..2630259 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK41_RS12445 (FJMB80149_24410) | 2626326..2627768 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK41_RS12450 (FJMB80149_24420) | 2627873..2628112 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK41_RS12455 (FJMB80149_24430) | 2628147..2628791 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK41_RS12460 (FJMB80149_24440) | 2628959..2629939 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK41_RS12465 (FJMB80149_24450) | 2629985..2630182 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2630058..2630259 | + | 202 | - | - | Antitoxin |
| - | 2630063..2630166 | - | 104 | - | - | Toxin |
| NGK41_RS12470 (FJMB80149_24460) | 2630308..2630646 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK41_RS12475 (FJMB80149_24470) | 2630663..2631532 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK41_RS12480 (FJMB80149_24480) | 2631534..2631905 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK41_RS12485 (FJMB80149_24490) | 2632043..2632273 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK41_RS12490 (FJMB80149_24500) | 2632385..2633023 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK41_RS12495 (FJMB80149_24510) | 2633048..2633710 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41257 NZ_AP025827:c2630166-2630063 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41257 NZ_AP025827:2630058-2630259 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
