Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2750969..2751170 | Replicon | chromosome |
| Accession | NZ_AP025824 | ||
| Organism | Enterobacter hormaechei strain FUJ80067 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2750974..2751077 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2750969..2751170 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ94_RS13220 (FJMB80067_26150) | 2747237..2748679 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ94_RS13225 (FJMB80067_26160) | 2748784..2749023 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ94_RS13230 (FJMB80067_26170) | 2749058..2749702 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ94_RS13235 (FJMB80067_26180) | 2749870..2750850 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ94_RS13240 (FJMB80067_26190) | 2750896..2751093 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2750969..2751170 | + | 202 | - | - | Antitoxin |
| - | 2750974..2751077 | - | 104 | - | - | Toxin |
| NGJ94_RS13245 (FJMB80067_26200) | 2751219..2751557 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ94_RS13250 (FJMB80067_26210) | 2751574..2752443 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGJ94_RS13255 (FJMB80067_26220) | 2752445..2752816 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ94_RS13260 (FJMB80067_26230) | 2752954..2753184 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ94_RS13265 (FJMB80067_26240) | 2753296..2753934 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ94_RS13270 (FJMB80067_26250) | 2753959..2754621 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41242 NZ_AP025824:c2751077-2750974 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41242 NZ_AP025824:2750969-2751170 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
