Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2649681..2649882 | Replicon | chromosome |
| Accession | NZ_AP025818 | ||
| Organism | Enterobacter hormaechei strain FUJ80065 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2649686..2649789 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2649681..2649882 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ50_RS12490 (FJMB80065_24380) | 2645949..2647391 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ50_RS12495 (FJMB80065_24390) | 2647496..2647735 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ50_RS12500 (FJMB80065_24400) | 2647770..2648414 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ50_RS12505 (FJMB80065_24410) | 2648582..2649562 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ50_RS12510 (FJMB80065_24420) | 2649608..2649805 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2649681..2649882 | + | 202 | - | - | Antitoxin |
| - | 2649686..2649789 | - | 104 | - | - | Toxin |
| NGJ50_RS12515 (FJMB80065_24430) | 2649931..2650269 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ50_RS12520 (FJMB80065_24440) | 2650286..2651155 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| NGJ50_RS12525 (FJMB80065_24450) | 2651157..2651528 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ50_RS12530 (FJMB80065_24460) | 2651666..2651896 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ50_RS12535 (FJMB80065_24470) | 2652008..2652646 | + | 639 | WP_087878447.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ50_RS12540 (FJMB80065_24480) | 2652671..2653333 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41210 NZ_AP025818:c2649789-2649686 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41210 NZ_AP025818:2649681-2649882 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
