Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
Location | 2693108..2693309 | Replicon | chromosome |
Accession | NZ_AP025812 | ||
Organism | Enterobacter hormaechei strain FUJ80062 |
Toxin (RNA)
Gene name | SdsR | ||
Locus tag | - | ||
Coordinates | 2693113..2693216 (-) |
Antitoxin (RNA)
Gene name | RyeA | ||
Locus tag | - | ||
Coordinates | 2693108..2693309 (+) |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
NGK32_RS12850 (FJMB80062_25030) | 2689376..2690818 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
NGK32_RS12855 (FJMB80062_25040) | 2690923..2691162 | + | 240 | WP_006811010.1 | YebV family protein | - |
NGK32_RS12860 (FJMB80062_25050) | 2691197..2691841 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
NGK32_RS12865 (FJMB80062_25060) | 2692009..2692989 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
NGK32_RS12870 (FJMB80062_25070) | 2693035..2693232 | + | 198 | WP_032609507.1 | hypothetical protein | - |
- | 2693108..2693309 | + | 202 | - | - | Antitoxin |
- | 2693113..2693216 | - | 104 | - | - | Toxin |
NGK32_RS12875 (FJMB80062_25080) | 2693358..2693696 | - | 339 | WP_022648464.1 | YebY family protein | - |
NGK32_RS12880 (FJMB80062_25090) | 2693713..2694582 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
NGK32_RS12885 (FJMB80062_25100) | 2694584..2694955 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
NGK32_RS12890 (FJMB80062_25110) | 2695093..2695323 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
NGK32_RS12895 (FJMB80062_25120) | 2695435..2696073 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
NGK32_RS12900 (FJMB80062_25130) | 2696098..2696760 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41178 NZ_AP025812:c2693216-2693113 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41178 NZ_AP025812:2693108-2693309 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC