Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 2693108..2693309 Replicon chromosome
Accession NZ_AP025812
Organism Enterobacter hormaechei strain FUJ80062

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 2693113..2693216 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 2693108..2693309 (+)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NGK32_RS12850 (FJMB80062_25030) 2689376..2690818 + 1443 WP_072202184.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -
NGK32_RS12855 (FJMB80062_25040) 2690923..2691162 + 240 WP_006811010.1 YebV family protein -
NGK32_RS12860 (FJMB80062_25050) 2691197..2691841 - 645 WP_022648462.1 protein-serine/threonine phosphatase -
NGK32_RS12865 (FJMB80062_25060) 2692009..2692989 + 981 WP_022648463.1 VirK/YbjX family protein -
NGK32_RS12870 (FJMB80062_25070) 2693035..2693232 + 198 WP_032609507.1 hypothetical protein -
- 2693108..2693309 + 202 - - Antitoxin
- 2693113..2693216 - 104 - - Toxin
NGK32_RS12875 (FJMB80062_25080) 2693358..2693696 - 339 WP_022648464.1 YebY family protein -
NGK32_RS12880 (FJMB80062_25090) 2693713..2694582 - 870 WP_196362403.1 copper homeostasis membrane protein CopD -
NGK32_RS12885 (FJMB80062_25100) 2694584..2694955 - 372 WP_022648466.1 CopC domain-containing protein YobA -
NGK32_RS12890 (FJMB80062_25110) 2695093..2695323 + 231 WP_003859784.1 DNA polymerase III subunit theta -
NGK32_RS12895 (FJMB80062_25120) 2695435..2696073 + 639 WP_022648467.1 nitrilase-related carbon-nitrogen hydrolase -
NGK32_RS12900 (FJMB80062_25130) 2696098..2696760 + 663 WP_022648468.1 exodeoxyribonuclease X -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T41178 NZ_AP025812:c2693216-2693113 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 202 bp

>AT41178 NZ_AP025812:2693108-2693309 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References