Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2661789..2661990 | Replicon | chromosome |
| Accession | NZ_AP025804 | ||
| Organism | Enterobacter hormaechei strain FUJ80053 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2661794..2661897 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2661789..2661990 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK45_RS12630 (FJMB80053_24760) | 2658057..2659499 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK45_RS12635 (FJMB80053_24770) | 2659604..2659843 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK45_RS12640 (FJMB80053_24780) | 2659878..2660522 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK45_RS12645 (FJMB80053_24790) | 2660690..2661670 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK45_RS12650 (FJMB80053_24800) | 2661716..2661913 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2661789..2661990 | + | 202 | - | - | Antitoxin |
| - | 2661794..2661897 | - | 104 | - | - | Toxin |
| NGK45_RS12655 (FJMB80053_24810) | 2662039..2662377 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK45_RS12660 (FJMB80053_24820) | 2662394..2663263 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK45_RS12665 (FJMB80053_24830) | 2663265..2663636 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK45_RS12670 (FJMB80053_24840) | 2663774..2664004 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK45_RS12675 (FJMB80053_24850) | 2664116..2664754 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK45_RS12680 (FJMB80053_24860) | 2664779..2665441 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41130 NZ_AP025804:c2661897-2661794 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41130 NZ_AP025804:2661789-2661990 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
