Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2724808..2725009 | Replicon | chromosome |
| Accession | NZ_AP025799 | ||
| Organism | Enterobacter hormaechei strain FUJ80023 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2724813..2724916 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2724808..2725009 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ00_RS13070 (FJMB80023_25540) | 2721076..2722518 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ00_RS13075 (FJMB80023_25550) | 2722623..2722862 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ00_RS13080 (FJMB80023_25560) | 2722897..2723541 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ00_RS13085 (FJMB80023_25570) | 2723709..2724689 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ00_RS13090 (FJMB80023_25580) | 2724735..2724932 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2724808..2725009 | + | 202 | - | - | Antitoxin |
| - | 2724813..2724916 | - | 104 | - | - | Toxin |
| NGJ00_RS13095 (FJMB80023_25590) | 2725058..2725396 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ00_RS13100 (FJMB80023_25600) | 2725413..2726282 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGJ00_RS13105 (FJMB80023_25610) | 2726284..2726655 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ00_RS13110 (FJMB80023_25620) | 2726793..2727023 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ00_RS13115 (FJMB80023_25630) | 2727135..2727773 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ00_RS13120 (FJMB80023_25640) | 2727798..2728460 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41098 NZ_AP025799:c2724916-2724813 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41098 NZ_AP025799:2724808-2725009 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
