Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2726292..2726493 | Replicon | chromosome |
| Accession | NZ_AP025795 | ||
| Organism | Enterobacter hormaechei strain FUJ80019 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2726297..2726400 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2726292..2726493 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ92_RS12985 (FJMB80019_25540) | 2722560..2724002 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ92_RS12990 (FJMB80019_25550) | 2724107..2724346 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ92_RS12995 (FJMB80019_25560) | 2724381..2725025 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ92_RS13000 (FJMB80019_25570) | 2725193..2726173 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ92_RS13005 (FJMB80019_25580) | 2726219..2726416 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2726292..2726493 | + | 202 | - | - | Antitoxin |
| - | 2726297..2726400 | - | 104 | - | - | Toxin |
| NGJ92_RS13010 (FJMB80019_25590) | 2726542..2726880 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ92_RS13015 (FJMB80019_25600) | 2726897..2727766 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGJ92_RS13020 (FJMB80019_25610) | 2727768..2728139 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ92_RS13025 (FJMB80019_25620) | 2728277..2728507 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ92_RS13030 (FJMB80019_25630) | 2728619..2729257 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ92_RS13035 (FJMB80019_25640) | 2729282..2729944 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41066 NZ_AP025795:c2726400-2726297 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41066 NZ_AP025795:2726292-2726493 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
