Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2730301..2730502 | Replicon | chromosome |
| Accession | NZ_AP025787 | ||
| Organism | Enterobacter hormaechei strain FUJ80013 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2730306..2730409 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2730301..2730502 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ87_RS13015 (FJMB80013_25410) | 2726569..2728011 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ87_RS13020 (FJMB80013_25420) | 2728116..2728355 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ87_RS13025 (FJMB80013_25430) | 2728390..2729034 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ87_RS13030 (FJMB80013_25440) | 2729202..2730182 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ87_RS13035 (FJMB80013_25450) | 2730228..2730425 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2730301..2730502 | + | 202 | - | - | Antitoxin |
| - | 2730306..2730409 | - | 104 | - | - | Toxin |
| NGJ87_RS13040 (FJMB80013_25460) | 2730551..2730889 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ87_RS13045 (FJMB80013_25470) | 2730906..2731775 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGJ87_RS13050 (FJMB80013_25480) | 2731777..2732148 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ87_RS13055 (FJMB80013_25490) | 2732286..2732516 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ87_RS13060 (FJMB80013_25500) | 2732628..2733266 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ87_RS13065 (FJMB80013_25510) | 2733291..2733953 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41018 NZ_AP025787:c2730409-2730306 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41018 NZ_AP025787:2730301-2730502 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
