Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2651020..2651221 | Replicon | chromosome |
| Accession | NZ_AP025784 | ||
| Organism | Enterobacter hormaechei strain FUJ80012 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2651025..2651128 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2651020..2651221 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ22_RS12490 (FJMB80012_24570) | 2647288..2648730 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ22_RS12495 (FJMB80012_24580) | 2648835..2649074 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ22_RS12500 (FJMB80012_24590) | 2649109..2649753 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ22_RS12505 (FJMB80012_24600) | 2649921..2650901 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ22_RS12510 (FJMB80012_24610) | 2650947..2651144 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2651020..2651221 | + | 202 | - | - | Antitoxin |
| - | 2651025..2651128 | - | 104 | - | - | Toxin |
| NGJ22_RS12515 (FJMB80012_24620) | 2651270..2651608 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ22_RS12520 (FJMB80012_24630) | 2651625..2652494 | - | 870 | WP_022648465.1 | copper homeostasis membrane protein CopD | - |
| NGJ22_RS12525 (FJMB80012_24640) | 2652496..2652867 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ22_RS12530 (FJMB80012_24650) | 2653005..2653235 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ22_RS12535 (FJMB80012_24660) | 2653347..2653985 | + | 639 | WP_087878447.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ22_RS12540 (FJMB80012_24670) | 2654010..2654672 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T41002 NZ_AP025784:c2651128-2651025 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT41002 NZ_AP025784:2651020-2651221 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
