Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2726286..2726487 | Replicon | chromosome |
| Accession | NZ_AP025780 | ||
| Organism | Enterobacter hormaechei strain FUJ80008 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2726291..2726394 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2726286..2726487 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK30_RS12985 (FJMB80008_25530) | 2722554..2723996 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK30_RS12990 (FJMB80008_25540) | 2724101..2724340 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK30_RS12995 (FJMB80008_25550) | 2724375..2725019 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK30_RS13000 (FJMB80008_25560) | 2725187..2726167 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK30_RS13005 (FJMB80008_25570) | 2726213..2726410 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2726286..2726487 | + | 202 | - | - | Antitoxin |
| - | 2726291..2726394 | - | 104 | - | - | Toxin |
| NGK30_RS13010 (FJMB80008_25580) | 2726536..2726874 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK30_RS13015 (FJMB80008_25590) | 2726891..2727760 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK30_RS13020 (FJMB80008_25600) | 2727762..2728133 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK30_RS13025 (FJMB80008_25610) | 2728271..2728501 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK30_RS13030 (FJMB80008_25620) | 2728613..2729251 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK30_RS13035 (FJMB80008_25630) | 2729276..2729938 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40970 NZ_AP025780:c2726394-2726291 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT40970 NZ_AP025780:2726286-2726487 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
