Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 1115395..1116016 Replicon chromosome
Accession NZ_AP025780
Organism Enterobacter hormaechei strain FUJ80008

Toxin (Protein)


Gene name Hha Uniprot ID A0A837FFM2
Locus tag NGK30_RS05295 Protein ID WP_015571250.1
Coordinates 1115395..1115613 (-) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID F5RUW7
Locus tag NGK30_RS05300 Protein ID WP_006809850.1
Coordinates 1115642..1116016 (-) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NGK30_RS05265 (FJMB80008_10260) 1111407..1111667 + 261 WP_015571255.1 type B 50S ribosomal protein L31 -
NGK30_RS05270 1111670..1111810 + 141 WP_003859006.1 type B 50S ribosomal protein L36 -
NGK30_RS05275 (FJMB80008_10270) 1111807..1112517 - 711 WP_022647267.1 GNAT family protein -
NGK30_RS05280 (FJMB80008_10280) 1112620..1114080 + 1461 WP_022647268.1 PLP-dependent aminotransferase family protein -
NGK30_RS05285 (FJMB80008_10290) 1114052..1114519 - 468 WP_022647269.1 YlaC family protein -
NGK30_RS05290 (FJMB80008_10300) 1114636..1115187 - 552 WP_022647270.1 maltose O-acetyltransferase -
NGK30_RS05295 (FJMB80008_10310) 1115395..1115613 - 219 WP_015571250.1 HHA domain-containing protein Toxin
NGK30_RS05300 (FJMB80008_10320) 1115642..1116016 - 375 WP_006809850.1 Hha toxicity modulator TomB Antitoxin
NGK30_RS05305 (FJMB80008_10330) 1116526..1119672 - 3147 WP_022647271.1 multidrug efflux RND transporter permease subunit AcrB -
NGK30_RS05310 (FJMB80008_10340) 1119695..1120888 - 1194 WP_022647272.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-114)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8583.95 Da        Isoelectric Point: 8.9008

>T40968 WP_015571250.1 NZ_AP025780:c1115613-1115395 [Enterobacter hormaechei]
MSDKPLTKVDYLMRLRRCQSIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPSSVWKFVR

Download         Length: 219 bp

>T40968 NZ_AP025780:c1115613-1115395 [Enterobacter hormaechei]
ATGTCTGATAAACCATTAACTAAAGTCGATTATTTGATGCGCCTGCGACGCTGTCAGTCAATTGACACGCTCGAACGAGT
TATTGAGAAAAATAAATACGAGCTGTCTGATAATGAACTGGCGGTATTTTATTCAGCTGCCGACCATCGTCTTGCTGAAC
TGACCATGAATAAACTCTATGACAAGATCCCCTCTTCGGTATGGAAATTTGTTCGTTAG

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14497.28 Da        Isoelectric Point: 4.8989

>AT40968 WP_006809850.1 NZ_AP025780:c1116016-1115642 [Enterobacter hormaechei]
MDEYSPKRHDIAQLKFLCESLYHDCLANLEESNHGWVNDPTSAINLQLNELIEHIATFALNYKIKYNEDNKLIEQIDEYL
DDTFMLFSSYGINAQDLQKWRKSGNRLFRCFTNVSRANPVSLSC

Download         Length: 375 bp

>AT40968 NZ_AP025780:c1116016-1115642 [Enterobacter hormaechei]
TTGGACGAGTACTCGCCAAAAAGGCATGATATCGCGCAGTTGAAATTTCTCTGCGAATCCTTGTACCATGACTGCCTTGC
CAATCTTGAAGAAAGTAACCATGGCTGGGTGAACGATCCAACGTCTGCTATCAATTTACAGCTTAATGAGCTGATCGAGC
ATATCGCAACCTTCGCACTTAATTATAAAATTAAGTACAATGAAGATAATAAGTTGATAGAGCAAATTGATGAATACCTG
GACGACACCTTTATGTTGTTCAGCAGCTACGGCATTAACGCACAGGATTTGCAGAAATGGCGTAAATCAGGAAACCGTCT
ATTTCGCTGCTTCACGAATGTCAGCAGAGCTAATCCGGTTAGTCTTTCCTGTTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A837FFM2

Antitoxin

Source ID Structure
AlphaFold DB A0A837FGN8

References