Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689872..2690073 | Replicon | chromosome |
| Accession | NZ_AP025774 | ||
| Organism | Enterobacter hormaechei strain FUJ80005 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689877..2689980 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689872..2690073 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK55_RS12840 (FJMB80005_25140) | 2686140..2687582 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK55_RS12845 (FJMB80005_25150) | 2687687..2687926 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK55_RS12850 (FJMB80005_25160) | 2687961..2688605 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK55_RS12855 (FJMB80005_25170) | 2688773..2689753 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK55_RS12860 (FJMB80005_25180) | 2689799..2689996 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2689872..2690073 | + | 202 | - | - | Antitoxin |
| - | 2689877..2689980 | - | 104 | - | - | Toxin |
| NGK55_RS12865 (FJMB80005_25190) | 2690122..2690460 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK55_RS12870 (FJMB80005_25200) | 2690477..2691346 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK55_RS12875 (FJMB80005_25210) | 2691348..2691719 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK55_RS12880 (FJMB80005_25220) | 2691857..2692087 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK55_RS12885 (FJMB80005_25230) | 2692199..2692837 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK55_RS12890 (FJMB80005_25240) | 2692862..2693524 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40938 NZ_AP025774:c2689980-2689877 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT40938 NZ_AP025774:2689872-2690073 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
