Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2691202..2691403 | Replicon | chromosome |
| Accession | NZ_AP025772 | ||
| Organism | Enterobacter hormaechei strain FUJ80004 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2691207..2691310 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2691202..2691403 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ78_RS12835 (FJMB80004_25230) | 2687470..2688912 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ78_RS12840 (FJMB80004_25240) | 2689017..2689256 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ78_RS12845 (FJMB80004_25250) | 2689291..2689935 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ78_RS12850 (FJMB80004_25260) | 2690103..2691083 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ78_RS12855 (FJMB80004_25270) | 2691129..2691326 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2691202..2691403 | + | 202 | - | - | Antitoxin |
| - | 2691207..2691310 | - | 104 | - | - | Toxin |
| NGJ78_RS12860 (FJMB80004_25280) | 2691452..2691790 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ78_RS12865 (FJMB80004_25290) | 2691807..2692676 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGJ78_RS12870 (FJMB80004_25300) | 2692678..2693049 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ78_RS12875 (FJMB80004_25310) | 2693187..2693417 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ78_RS12880 (FJMB80004_25320) | 2693529..2694167 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ78_RS12885 (FJMB80004_25330) | 2694192..2694854 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40922 NZ_AP025772:c2691310-2691207 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT40922 NZ_AP025772:2691202-2691403 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
