Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2659011..2659212 | Replicon | chromosome |
| Accession | NZ_AP025770 | ||
| Organism | Enterobacter hormaechei strain FUJ80003 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2659016..2659119 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2659011..2659212 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGJ61_RS12785 (FJMB80003_25180) | 2655279..2656721 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGJ61_RS12790 (FJMB80003_25190) | 2656826..2657065 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGJ61_RS12795 (FJMB80003_25200) | 2657100..2657744 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGJ61_RS12800 (FJMB80003_25210) | 2657912..2658892 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGJ61_RS12805 (FJMB80003_25220) | 2658938..2659135 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2659011..2659212 | + | 202 | - | - | Antitoxin |
| - | 2659016..2659119 | - | 104 | - | - | Toxin |
| NGJ61_RS12810 (FJMB80003_25230) | 2659261..2659599 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGJ61_RS12815 (FJMB80003_25240) | 2659616..2660485 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGJ61_RS12820 (FJMB80003_25250) | 2660487..2660858 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGJ61_RS12825 (FJMB80003_25260) | 2660996..2661226 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGJ61_RS12830 (FJMB80003_25270) | 2661338..2661976 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGJ61_RS12835 (FJMB80003_25280) | 2662001..2662663 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40907 NZ_AP025770:c2659119-2659016 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT40907 NZ_AP025770:2659011-2659212 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
