Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2689094..2689295 | Replicon | chromosome |
| Accession | NZ_AP025767 | ||
| Organism | Enterobacter hormaechei strain FUJ80002 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2689099..2689202 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2689094..2689295 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NGK40_RS12830 (FJMB80002_25090) | 2685362..2686804 | + | 1443 | WP_072202184.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| NGK40_RS12835 (FJMB80002_25100) | 2686909..2687148 | + | 240 | WP_006811010.1 | YebV family protein | - |
| NGK40_RS12840 (FJMB80002_25110) | 2687183..2687827 | - | 645 | WP_022648462.1 | protein-serine/threonine phosphatase | - |
| NGK40_RS12845 (FJMB80002_25120) | 2687995..2688975 | + | 981 | WP_022648463.1 | VirK/YbjX family protein | - |
| NGK40_RS12850 (FJMB80002_25130) | 2689021..2689218 | + | 198 | WP_032609507.1 | hypothetical protein | - |
| - | 2689094..2689295 | + | 202 | - | - | Antitoxin |
| - | 2689099..2689202 | - | 104 | - | - | Toxin |
| NGK40_RS12855 (FJMB80002_25140) | 2689344..2689682 | - | 339 | WP_022648464.1 | YebY family protein | - |
| NGK40_RS12860 (FJMB80002_25150) | 2689699..2690568 | - | 870 | WP_196362403.1 | copper homeostasis membrane protein CopD | - |
| NGK40_RS12865 (FJMB80002_25160) | 2690570..2690941 | - | 372 | WP_022648466.1 | CopC domain-containing protein YobA | - |
| NGK40_RS12870 (FJMB80002_25170) | 2691079..2691309 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| NGK40_RS12875 (FJMB80002_25180) | 2691421..2692059 | + | 639 | WP_022648467.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| NGK40_RS12880 (FJMB80002_25190) | 2692084..2692746 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T40891 NZ_AP025767:c2689202-2689099 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT40891 NZ_AP025767:2689094-2689295 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
